SNP Profiles matching IMC 96

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
1._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
2._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
3._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
4._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
5._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
6._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
7._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
8._MARPER_38	CC	AA	CG	TT	-	AA	TT	-	CC	-	AA	AG	-	GG
9._MARPER_28	CC	AA	CC	TT	-	AA	TT	-	CC	-	AA	AG	-	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
1._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
2._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
3._IMC_96	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
4._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
5._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
6._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
7._GC-08-255-8-23	TT	AA	GG	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
8._MARPER_38	TT	AA	GG	-	-	GG	AA	CC	-	GG	-	CT	CC	AA
9._MARPER_28	TT	AA	GG	-	-	GG	AA	CC	-	GG	-	TT	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
1._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
2._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
3._IMC_96	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
4._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
5._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
6._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
7._GC-08-255-8-23	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X
8._MARPER_38	GG	-	CC	AA	-	-	-	GG	-	TT	-	X_X	X_X	X_X
9._MARPER_28	GG	-	CC	AA	-	-	-	GG	-	TT	-	X_X	X_X	X_X

Input profile: IMC_96

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Mars Center for Cocoa Science, Brazil

Location: 8823 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._IMC_96

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 6

Dapeng Zhang, 2016

2._IMC_96

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 5

Dapeng Zhang, 2016

3._IMC_96

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 2

Dapeng Zhang, 2016

4._IMC_96 GC-08-255-8-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._IMC_96 GC-08-255-8-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._IMC_96 GC-08-255-8-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._IMC_96 GC-08-255-8-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._MARPER_38

94 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 167

Dapeng Zhang, 2014

9._MARPER_28

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 647A

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25